PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010316
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 436aa    MW: 48346.9 Da    PI: 4.2897
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010316genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.59.8e-28118183171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  r+++sL+llt+kf++ll+++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+i+wkg
  DCAR_010316 118 RYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTL---EV--QKRRIYDITNVLEGIGLIEKTVKNRIQWKG 183
                  6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-29116185IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-17118181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-35118183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.0E-25120183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.88E-30198300No hitNo description
CDDcd146604.06E-44199300No hitNo description
PfamPF164213.5E-31199298IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSSTSRAPNQ PPEQILVKPS FGDYYRFSSV GHLTPEPDVL VVKSPPLKRS NEGADFEGGF  60
GGRSSNSSFP PQTPVSGKSV KARKVPRMAK SNQTGSETPA ANVGSPLGNN FTPAGPCRYD  120
SSLGLLTKKF VNLLKNAEDG IIDLNNAADT LEVQKRRIYD ITNVLEGIGL IEKTVKNRIQ  180
WKGLDSARPG DVDESTGTLQ EDIETFSMEE IRLDEKIREM QERLRDLSED ENNQRWLFVT  240
EEDIKSLPCF QNETLIAIKA PHGSTLEVPD PDEAVDYPQR RYRVVLRSTM GPIDVYLVSQ  300
FEEKFEEING VEAPASIPPE LPVTECQATV VVPEESRENA TDMQGQETRT ICPNENESHD  360
IVNGIMKIVP DVDNDADYWL STDAEVSITD MWRIESGVEW NELEPLHDDF LMASVSTPPI  420
SRPDELPSPP NTTGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-25113184274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238568.10.0PREDICTED: transcription factor E2FB-like
SwissprotQ9FV711e-142E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A166ANS10.0A0A166ANS1_DAUCS; Uncharacterized protein
STRINGVIT_06s0080g01110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10772484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-145E2F transcription factor 1
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Wu M,Liu L,Hijazi H,Chan C
    A multi-layer inference approach to reconstruct condition-specific genes and their regulation.
    Bioinformatics, 2013. 29(12): p. 1541-52
    [PMID:23610368]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]