PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27720 Da PI: 4.5589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.7 | 2.7e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v s + DCAR_010211 6 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSS-Q 101 79****************************.99**************84335556888*************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kktLv+y+grap+g +tdWvmheyrl DCAR_010211 102 NYPIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-63 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.693 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSPVGLPPGF RFHPTDEELV NYYLKRKIHG LEIELDIIPE VDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRKVSS QNYPIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECDD STSGIQDSYA LCRVFKKNGI CGSELEDQGQ LNMVLTEEIP 180 QGILTEYETG SPSNILPSAP SACIEDEDKD DSWMQFIKDD AWCSFNTPIL GEETSQVTDA 240 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-53 | 4 | 158 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017242767.1 | 0.0 | PREDICTED: NAC domain-containing protein 45 | ||||
Swissprot | A4VCM0 | 4e-88 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | A0A161XXS3 | 1e-180 | A0A161XXS3_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0015s05450.1 | 1e-137 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4621 | 24 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-124 | NAC domain containing protein 57 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010211 |
Publications ? help Back to Top | |||
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