PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37569.2 Da PI: 7.2342 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.6e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelv +yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls+ ++ DCAR_009975 16 LPPGFRFHPTDEELVLHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSSgGT 112 79****************************.88***************999999****************************************9777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy gr pkg k++W+mheyrl DCAR_009975 113 QKVGVKKALVFYGGRPPKGIKSNWIMHEYRL 143 88***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-64 | 10 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.943 | 16 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MESTDSSGGS QQQPQLPPGF RFHPTDEELV LHYLKKKAAS APLPVAIIAE VDLYKFDPWE 60 LPAKASFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSSG GTQKVGVKKA 120 LVFYGGRPPK GIKSNWIMHE YRLADNNKST NMKPPGCDIA NNKKGSLRLD DWVLCRIYKK 180 NNSQRPLMEH ESCDSMGDMI LGSIKSEPCV QIGQQHPKLP GSYGAMLENE QSMLQSAPNL 240 ASLMSMKRGL FWEEDGGPSL ANKRFLTADH QNDEEGKTVQ DDNGSISMAS FLGQFPQSTQ 300 ADEAMHQQGP MLGNLGDGAY REQHNFNQLQ SNMNWYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-73 | 13 | 183 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-73 | 13 | 183 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-73 | 13 | 183 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-73 | 13 | 183 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-73 | 13 | 183 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-73 | 13 | 183 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-73 | 13 | 183 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240671.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | Q8GY42 | 1e-103 | NAC25_ARATH; NAC transcription factor 25 | ||||
Swissprot | Q9LD44 | 1e-103 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A162AI21 | 0.0 | A0A162AI21_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_022751m | 1e-138 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-104 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009975 |
Publications ? help Back to Top | |||
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