PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009963
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 325aa    MW: 36858.8 Da    PI: 5.4431
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009963genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-092452821954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  DCAR_009963 245 FEHflHPYPNDSEKLVLASQTGLSKNQVSNWFINARVR 282
                  664459******************************88 PP
2BELL98.36.3e-32113184172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+qel+++ +kL+slleeV++r++qy++ l+ v+ssFe +ag ++ k+Yt+lAl+a+SrhF +Lkdai++qi
  DCAR_009963 113 EKQELEAQLSKLISLLEEVERRFEQYYHHLEEVVSSFELIAGAEAGKSYTALALQAMSRHFCSLKDAIIHQI 184
                  689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-3245182IPR006563POX domain
PfamPF075262.7E-3751180IPR006563POX domain
PROSITE profilePS5007111.936223286IPR001356Homeobox domain
CDDcd000861.51E-10226287No hitNo description
SMARTSM003897.3E-9226290IPR001356Homeobox domain
SuperFamilySSF466891.8E-17231293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-26231292IPR009057Homeodomain-like
PfamPF059207.4E-17243282IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQRPLTSNLM NPIYSCNPEY AISDSCFPSS SASQYQLSSN FFGTESYMIA IGESKYLKPA  60
QALLEEAVSV GEKAVYLNNE KNIRKLSPTD KKGSIGLCSE LRSELFNSVL SLEKQELEAQ  120
LSKLISLLEE VERRFEQYYH HLEEVVSSFE LIAGAEAGKS YTALALQAMS RHFCSLKDAI  180
IHQICVARRK HMPRINMGLS QLSLIDQENR VSLQQLGMIH NTRQTWRPIR GLPENSVTIL  240
RSWLFEHFLH PYPNDSEKLV LASQTGLSKN QVSNWFINAR VRLWKPMIEE MYKEEFGDDS  300
VDPALDSNSI SNERITDDVD EPSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-16232290563Homeobox protein Meis2
3k2a_B9e-16232290563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238801.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD13e-93BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A166AGE10.0A0A166AGE1_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g13130.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-95BEL1-like homeodomain 11