PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009888
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 350aa    MW: 38944.2 Da    PI: 4.5782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009888genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-102753151055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  DCAR_009888 275 RKRREKINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 315
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.862265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-14267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12270328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-11271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-12274319No hitNo description
PfamPF000101.6E-7275315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MESMGVLQHE DCDFLNKMFS NDDEADFAFQ FWEGFGNHTI FLPTNEANAD ANSVGFDDNL  60
YSSSEFFNTS FCHSQDNTNI STSSNNYSAC LPNVSHEVPR FCGSNIIPMM DNISKSMNIF  120
LMDEENNALG KFVPNEHYVQ DVVTAEVGKG IADVTDLGIE TNFEVLQQPE TVAIVENIPK  180
KRCRVPRDTP KYKKNVQTKR TKRVTQSVKI DAENNLNGTN GQSSSTYSSE DDSNASQELN  240
NGATSDSTEA VALNSSGKPR AGRGAATDPQ SLYARKRREK INERLRILQN LVPNGTKVDI  300
STMLEEAVHY VKFLQLQIKL LSSDEMWMYA PIAYNGMDMG LYQNISQAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239456.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A166AEN70.0A0A166AEN7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-54root hair defective 6-like 4