PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | TCP | ||||||||
Protein Properties | Length: 176aa MW: 18475 Da PI: 9.1566 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.8 | 4e-30 | 20 | 145 | 5 | 105 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg............ 88 +++ ++Tkv+gR+ R+R++ +ca r+F+L++eLG+ +d+ ti+WLl+qa+pai+ +tgt++ +a ++ + s + + ++g DCAR_009838 20 PAPKKERYTKVEGRGSRIRMPTLCATRVFQLTKELGLATDGATIQWLLEQAEPAIIRATGTGTVPAIATvtA--DGSLRVPETKEGaaedvsktsgla 115 67899********************************************************88888666332..333333322222234555555566 PP TCP 89 .............kaaksaakskksqksaa 105 aa++ +k +++q+s + DCAR_009838 116 avgpspvsvpgygMAAENGMKMNQNQASVS 145 667666666665433333334444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-23 | 22 | 99 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 19.429 | 23 | 77 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSSQKDFKGD SQVSGGPSQP APKKERYTKV EGRGSRIRMP TLCATRVFQL TKELGLATDG 60 ATIQWLLEQA EPAIIRATGT GTVPAIATVT ADGSLRVPET KEGAAEDVSK TSGLAAVGPS 120 PVSVPGYGMA AENGMKMNQN QASVSCEARV SSAAEDEYDE VVLMGKKIRF RKRGL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017239441.1 | 1e-125 | PREDICTED: transcription factor PCF2-like | ||||
TrEMBL | A0A166ADD4 | 1e-124 | A0A166ADD4_DAUCS; Uncharacterized protein | ||||
STRING | Bo4g024860.1 | 2e-31 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 9e-34 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009838 |