PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009712
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 339aa    MW: 37857.2 Da    PI: 5.6559
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009712genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv++++  G+g+W+  ++   + R++k+c++rw +yl
      DCAR_009712 14 KGPWTQEEDAKLVQYIQANGPGNWRNLPQNADLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.52.8e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e ++++++ +G++ W++Ia++++ gRt++++k++w+++
      DCAR_009712  67 RGRFSFEEEEAIIQLHRVMGNK-WSAIAAHLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.902961IPR017930Myb domain
SuperFamilySSF466895.24E-3011108IPR009057Homeodomain-like
SMARTSM007175.4E-121363IPR001005SANT/Myb domain
PfamPF002496.5E-141461IPR001005SANT/Myb domain
CDDcd001675.18E-101661No hitNo description
PROSITE profilePS5129425.83962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2765116IPR009057Homeodomain-like
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1567111IPR001005SANT/Myb domain
CDDcd001673.08E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRAPCCDKN GLKKGPWTQE EDAKLVQYIQ ANGPGNWRNL PQNADLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHRVMGNKWS AIAAHLPGRT DNEIKNYWNT HIRKRLLRMG  120
VDPVTHSPRI DFHDLSNILG SAQLNLSNLL GLQTAVSPEL LGLANLLSSS QYQNPDLSFS  180
LQKLQQLDNI IKNGDQVQSL YSNQYQNLTQ VVSPSIVNQA LLMEGNIGQY LSPTNSGFEN  240
LQGNQTSLTA LQNMGYSACM ADENLTESPD SQLISNDQSR HFDSGFSTPK SNSTSTPLNS  300
SSTFVNSISN NENAGDRFCS NELTFEIPES FNFDEFIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-30121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-30121162105C-Myb DNA-Binding Domain
1msf_C8e-30121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241521.10.0PREDICTED: myb-related protein 315-like
SwissprotQ9LDR83e-90MY102_ARATH; Transcription factor MYB102
TrEMBLA0A166AAN90.0A0A166AAN9_DAUCS; Uncharacterized protein
STRINGVIT_12s0134g00570.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-92MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]