PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009710
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 294aa    MW: 33863.2 Da    PI: 4.8501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009710genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  +++++G+ +W+  ++  g+ R++k+c++rw +yl
      DCAR_009710 14 KGEWSKEEDDKLRAYINRYGTWNWRQLPKFAGLSRCGKSCRLRWKNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding48.32.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+++++++++qlG++ W+  a+ ++ gRt++++k++w+++l
      DCAR_009710  67 RGNFTKDEEDIIINLHNQLGKK-WSIFAKNLP-GRTDNEIKNYWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-22764IPR009057Homeodomain-like
PROSITE profilePS5129417.028961IPR017930Myb domain
SuperFamilySSF466896.74E-2811108IPR009057Homeodomain-like
SMARTSM007174.0E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-131461IPR001005SANT/Myb domain
CDDcd001671.88E-91661No hitNo description
PROSITE profilePS5129423.14462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2465115IPR009057Homeodomain-like
SMARTSM007175.4E-1466114IPR001005SANT/Myb domain
PfamPF002492.7E-1367112IPR001005SANT/Myb domain
CDDcd001679.75E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVRSPSIDKN GIKKGEWSKE EDDKLRAYIN RYGTWNWRQL PKFAGLSRCG KSCRLRWKNY  60
LQPNVKRGNF TKDEEDIIIN LHNQLGKKWS IFAKNLPGRT DNEIKNYWHT HLKKRTQGQN  120
SVMPSNQEIK RESPSLIIKE DTNQESSQPD NYQQTSIPPF QGLTSPNESC CTVLSQSYSS  180
TPSSLEYSSA DFWSQELTIE DYDLTQGSSC SELSFGSVYD PKSSDLSTWI RTNFSNFDYL  240
DDLWSESFET DNYMINAYNN QQSYVDPGHV YPSSPSTEEV CLWSYDLSDE SIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240517.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A166AAN20.0A0A166AAN2_DAUCS; Uncharacterized protein
STRINGXP_006447414.12e-61(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-54myb domain protein 9