PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009709
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 300aa    MW: 34326 Da    PI: 6.2382
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009709genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+ +++++G  +W+  +++ g+ R++k+c++rw +yl
      DCAR_009709 14 KGEWSKEEDDKLKAYINRYGIWNWRQLPKYAGLSRCGKSCRLRWKNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding52.31.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+++++++++qlG++ W+  a++++ gRt++++k++w+++l
      DCAR_009709  67 RGNFTKEEEDIIINLHNQLGKK-WSIFAKHLP-GRTDNEIKNYWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.911961IPR017930Myb domain
SuperFamilySSF466891.3E-2811108IPR009057Homeodomain-like
SMARTSM007179.2E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-221568IPR009057Homeodomain-like
CDDcd001676.85E-101661No hitNo description
PROSITE profilePS5129424.33562116IPR017930Myb domain
SMARTSM007174.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2569115IPR009057Homeodomain-like
CDDcd001673.71E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVRAPSIDKN GIKKGEWSKE EDDKLKAYIN RYGIWNWRQL PKYAGLSRCG KSCRLRWKNY  60
LQPDVKRGNF TKEEEDIIIN LHNQLGKKWS IFAKHLPGRT DNEIKNYWHT HLKKRTQGQN  120
NLTPPSNQVK AESSCQTPQI LKEEIKREPS QTDNNHHQIS TLGLCQGLTS PSVSGCSTGL  180
SRSYYDAPSH QESSGNIWNQ DLMVEDYELA QGSSCSDFSF SYSDDSNMSN LMTAGDHTTI  240
TPTYECFDDF WSQLLETDYM VSSYKHQQPF VDPVNIPSSP IADEVFLWSY DLSSDESNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240478.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A161WQK80.0A0A161WQK8_DAUCS; Uncharacterized protein
STRINGPOPTR_0019s14130.14e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-54myb domain protein 9