PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009670

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 399aa MW: 44680.9 Da PI: 6.5152

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009670	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.3e-53	25	156	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF+Pt+eel+++yL +kv ++++++ +i e++++++ePwdLpk++k +e+ewy F++rd+ky+tg r+nrat+sgyWkatgkdke++sk DCAR_009670 25 LPPGFRFNPTNEELITHYLLPKVLDSNFTA-AAIGEANLNRCEPWDLPKEAKMGEEEWYLFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYSKtgn 121 79***********************999.78***********99999*************************************9888 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgek dWvmhe+rle DCAR_009670 122 sRKQLVGMKKTLVFYKGRAPKGEKMDWVMHEFRLE 156 77888*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-60	17	177	IPR003441	NAC domain
PROSITE profile	PS51005	56.83	25	177	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	26	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MEGAFVNQGD SYGISANQAV DQLDLPPGFR FNPTNEELIT HYLLPKVLDS NFTAAAIGEA 60 NLNRCEPWDL PKEAKMGEEE WYLFCQRDRK YPTGMRTNRA TESGYWKATG KDKEIYSKTG 120 NSRKQLVGMK KTLVFYKGRA PKGEKMDWVM HEFRLEGNYS FPAKAKDEWV VCRIIHKNTT 180 TITKPGSMLD LTRMDSFIEG LLDSPLLPPL IKSQIPENNE KTHASNSTKI IINTSSRIPD 240 SGGTAPPNYP ITTGSLDAND INYHPNLMLP KNHNATSFSP TTNYKMPNSI SYSQNPYHTS 300 LTTSYNLLHQ QNLGQFTPRV PGSYNPQQVT DQALQRHCKV EQLSSNQSMV SRSQDTGLST 360 DVTAEISSAK QENNSNDVGS FHDIEDGPLS DLESFWSY*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MEGAFVNQGD SYGISANQAV DQLDLPPGFR FNPTNEELIT HYLLPKVLDS NFTAAAIGEA  60
NLNRCEPWDL PKEAKMGEEE WYLFCQRDRK YPTGMRTNRA TESGYWKATG KDKEIYSKTG  120
NSRKQLVGMK KTLVFYKGRA PKGEKMDWVM HEFRLEGNYS FPAKAKDEWV VCRIIHKNTT  180
TITKPGSMLD LTRMDSFIEG LLDSPLLPPL IKSQIPENNE KTHASNSTKI IINTSSRIPD  240
SGGTAPPNYP ITTGSLDAND INYHPNLMLP KNHNATSFSP TTNYKMPNSI SYSQNPYHTS  300
LTTSYNLLHQ QNLGQFTPRV PGSYNPQQVT DQALQRHCKV EQLSSNQSMV SRSQDTGLST  360
DVTAEISSAK QENNSNDVGS FHDIEDGPLS DLESFWSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-51	9	181	1	169	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-51	9	181	1	169	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-51	9	181	1	169	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-51	9	181	1	169	NO APICAL MERISTEM PROTEIN
4dul_A	8e-51	9	181	1	169	NAC domain-containing protein 19
4dul_B	8e-51	9	181	1	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017239122.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FK44	2e-92	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A166A9R0	0.0	A0A166A9R0_DAUCS; Uncharacterized protein
STRING	POPTR_0019s04710.1	1e-115	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	2e-94	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	DCAR_009670

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]