PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25169.4 Da PI: 6.9138 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r++ +g+Wv+e+r+p n + r++lg++ tae+Aa+a + a+ +l+g DCAR_009396 61 PVYRGIRRRN-SGKWVCEVREPI-N--NSRIWLGTHPTAEMAARANDVAAIALRG 111 68*****888.8******99973.3..3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-12 | 61 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-19 | 62 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.14 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-26 | 62 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-29 | 62 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 63 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.41E-30 | 63 | 121 | No hit | No description |
PRINTS | PR00367 | 4.8E-8 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MNNSLLYSDE ASSSQSTEYS SNTESTANCN DITQISHEVL LASRNPKKRS GRKKFKETRH 60 PVYRGIRRRN SGKWVCEVRE PINNSRIWLG THPTAEMAAR ANDVAAIALR GRNACLNFAD 120 SVWRLPIPAS NDVKDIQIAA AKAAEAFRPK KIEKTIESSP IKALVSEEND EVLFMDEELL 180 FGMPQFIKHM AQGMLLPPPQ YLQSDRCYGD DDLEYATDMS LWC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017242530.1 | 1e-168 | PREDICTED: dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 3e-68 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A166A1V5 | 1e-167 | A0A166A1V5_DAUCS; Uncharacterized protein | ||||
STRING | EMJ19511 | 5e-81 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-66 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009396 |
Publications ? help Back to Top | |||
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