PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_009305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 39231.8 Da PI: 8.0614 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.5e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl DCAR_009305 14 RGPWSSEEDAKLKDYIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.4 | 1.2e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ Ed+++ +++ G++ W+ Ia+ ++ gRt++++k++w++ DCAR_009305 69 GEFSDAEDKIICTLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.626 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.18E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.50E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 15.61 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-7 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSSE EDAKLKDYIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIRHGE FSDAEDKIIC TLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKVFMG 120 STSSFMLPPH KIKPSDHHQH FQYSYTSYAP SSVSFLQSPS SLPNPSSSSP PIKCRPTTTS 180 KGYDSADTPA AAAGPFTGNY SYENISSISF PPNVHVQNTE TLSTGPPDPA MQNLCHGGGV 240 MYESPIIMFG ANNQAAANGS SSDGGNSSNK DQVDHFGQLL MYPNRGGHSL IDGINVVAGG 300 KQVLFSGDDE TAPLDYNSLE EIKQLISATS NSNLNIFGNI NESNKMMPYN QEEKVGSYY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238877.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | A0A162AGE6 | 0.0 | A0A162AGE6_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-74 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_009305 |