PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NF-YB | ||||||||
Protein Properties | Length: 210aa MW: 22494 Da PI: 7.5774 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 144.2 | 3.1e-45 | 27 | 121 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vr+qd +lPian+srim+k++P+n+ki+k++ke +qecv++fis++t+easdkc+++krkti+gdd+lwa++ Gf++y+ pl++y++k+r e+ DCAR_009288 27 VRDQDMLLPIANISRIMRKAVPQNGKIAKESKERIQECVTDFISYITGEASDKCREDKRKTISGDDVLWAMSRAGFQNYIGPLTLYMHKFRAGEK 121 589****************************************************************************************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.1E-45 | 24 | 129 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-34 | 30 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-23 | 33 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.5E-12 | 61 | 79 | No hit | No description |
PRINTS | PR00615 | 4.5E-12 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 4.5E-12 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MESIVENAAV SPGRGSSENG NRSFESVRDQ DMLLPIANIS RIMRKAVPQN GKIAKESKER 60 IQECVTDFIS YITGEASDKC REDKRKTISG DDVLWAMSRA GFQNYIGPLT LYMHKFRAGE 120 KRAATKGGRG SANMNGGVGG SGIGNGDNGL AQQISHSQVV IDANSQILFP SQAVNDANSQ 180 GLFPSHGVND VNSQAHGEFV TAFMQGRQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 1e-40 | 26 | 117 | 1 | 92 | NF-YB |
4awl_B | 1e-40 | 26 | 117 | 2 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 1e-40 | 26 | 117 | 2 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017239353.1 | 1e-154 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q75IZ7 | 5e-45 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A165ZXV6 | 1e-153 | A0A165ZXV6_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.7 | 7e-46 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009288 |
Publications ? help Back to Top | |||
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