PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009139
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 383aa    MW: 42371.2 Da    PI: 8.4785
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009139genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.66.8e-26136180145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+
  DCAR_009139 136 DPEPGRCRRTDGKKWRCSRDVVGGYKYCERHMHRGRNRSRKPVET 180
                  79****************************************996 PP
2QLQ46.31.3e-1665100136
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                  s+F+ aQ+q+L+ Q+ +y++++a++PvPp+Ll  ++
  DCAR_009139  65 SYFSMAQWQELEVQACIYRHFIAGAPVPPQLLHLVK 100
                  79*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-865101IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.36466101IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-116699IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.43136180IPR014977WRC domain
PfamPF088794.6E-22137179IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDLQHLKQWQ KHESDEQSDS TRLLLNDCYY QQNHSNCSEL PLFTSPEQSA TKLDLHSAPP  60
ASHSSYFSMA QWQELEVQAC IYRHFIAGAP VPPQLLHLVK KSLILSSHSS SSYYHSSPYH  120
SALLQSGGYW GRGGMDPEPG RCRRTDGKKW RCSRDVVGGY KYCERHMHRG RNRSRKPVET  180
PTAHSNAAFP LEDTNQSVAA QPPTATPFRL SGPSHSFDLL PVNHRPRESE IKIALESKCL  240
FPSRPCGTVN ETKGLYEMPK RELSENSKSS SSQVLRPFFD DWPRSLQESE SLGTSLSISV  300
PGNPSSDVSL KLNSCGARGS PGPEGHVKRE QLQSQWGSSS SPWGTNQMGG PLAEALRSSS  360
TTMSMATSVL HQQRVAGNYT ST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240503.10.0PREDICTED: growth-regulating factor 3
TrEMBLA0A165ZSZ00.0A0A165ZSZ0_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g03760.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.14e-48growth-regulating factor 4