PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 292aa MW: 31897.8 Da PI: 7.1331 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.6e-30 | 101 | 154 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl DCAR_009125 101 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 154 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-20 | 98 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 98 | 157 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-30 | 100 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 102 | 154 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 104 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MREDESNWFS KWEEQLPSPD ELMPLSQTLI TPHLAVAFDI TNNPVINTSP GGVATLQVQH 60 SLQPPPPLSM PLQSPNSGEF DSSELGGGGA AGDEPARTLK RPRLVWTPQL HKRFVDAVAH 120 LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GLSGSGGGSH ASSGDAATDH 180 LFASSPVPAH FLHQGRSNSE HFLPFVPVSA LQQQQMVAVA GHPQYRHVPH FGSPSNAQFE 240 HPFMARQPHQ QQQQVHRMGT PVQNTLQSSY IEDLESGNAR KVLTLFPTGN D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-32 | 101 | 157 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238003.1 | 0.0 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 2e-65 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A162AG15 | 0.0 | A0A162AG15_DAUCS; Uncharacterized protein | ||||
STRING | XP_010036386.1 | 1e-122 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2432 | 23 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-86 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009125 |
Publications ? help Back to Top | |||
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