PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008994
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 302aa    MW: 34213.6 Da    PI: 7.9216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008994genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-161966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W  eEd ll ++++++G g W++++++ g++R++k+c++rw++yl
      DCAR_008994 19 KGAWDFEEDALLRKCIEKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 66
                     799*******************************************97 PP
2Myb_DNA-binding41.62.8e-1372115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E +l  +++++lG++ W++I  +++ gRt++++k++w++
      DCAR_008994  72 RGEFSEDEVDLMMRLHRLLGNR-WSLIGGRLP-GRTANDVKNYWNT 115
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8321470IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-211569IPR009057Homeodomain-like
SuperFamilySSF466892.54E-2617113IPR009057Homeodomain-like
SMARTSM007172.4E-141868IPR001005SANT/Myb domain
PfamPF002494.6E-151966IPR001005SANT/Myb domain
CDDcd001672.18E-102166No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2070121IPR009057Homeodomain-like
PROSITE profilePS5129417.42171121IPR017930Myb domain
SMARTSM007172.3E-1171119IPR001005SANT/Myb domain
PfamPF002499.0E-1272115IPR001005SANT/Myb domain
CDDcd001677.18E-874117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSYSRGMKSA GNAASKLRKG AWDFEEDALL RKCIEKYGEG KWHLVPQRAG LNRCRKSCRL  60
RWLNYLRPTI KRGEFSEDEV DLMMRLHRLL GNRWSLIGGR LPGRTANDVK NYWNTNIQKK  120
LTTGSNQKEV AIREEIVQRK QDGNVAATST SDRATTVIKP LPRMLSKGTS LPCYNLNLKN  180
RVSFGLNDKT LQNNNNENNK KPSLPAMLPL NDEGNETLTP DEDGTEWWKN LFAEIDIDGQ  240
EQDSSQGLLM ASSSGLENAD ADIDLMRKTD KSTTAIMEFS DDLSDIWDLL DPPDYIWLSR  300
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23171235110B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239292.10.0PREDICTED: transcription factor MYB113-like
TrEMBLA0A165ZNF60.0A0A165ZNF6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-63myb domain protein 113