PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 33661.8 Da PI: 5.4935 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.3e-19 | 83 | 132 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ r r +lg+f+taeeAa+ ++ a+++++g DCAR_008908 83 KFRGVRRRP-WGKFAAEIRDPVQ---RVRLWLGTFDTAEEAARVYDTAALRIRG 132 89*******.**********755...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-29 | 82 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-11 | 83 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-32 | 83 | 139 | No hit | No description |
PROSITE profile | PS51032 | 23.551 | 83 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 83 | 140 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.1E-36 | 83 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MMHPKKLMKP SSRKPKKFLH KIVRVSVTDP DATDSSSDEE GGSFHKPRVK KYVREIIVEA 60 TGVVSRRKVK ENLKRVAAPA GRKFRGVRRR PWGKFAAEIR DPVQRVRLWL GTFDTAEEAA 120 RVYDTAALRI RGPDALTNFI HPTEKPENKI LDEISNVASP TSVLSLFEME AEEYSKHENN 180 YTSPCLTVDN SDVDHMSECQ CREPFSFPNE PIFPNDDFSS QEYEIPSPFH EACLRYGFSF 240 YQKTGIDDFD IPIQLEEAGI YTDKDDSRIP YDLKLEIGSP LSSDVGDYFE ENLSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 81 | 139 | 3 | 62 | ATERF1 |
3gcc_A | 3e-21 | 81 | 139 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241075.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Swissprot | Q9SUE3 | 5e-40 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A165ZKN2 | 0.0 | A0A165ZKN2_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.008G271200.1 | 4e-48 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-42 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008908 |
Publications ? help Back to Top | |||
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