PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15734.7 Da PI: 10.2228 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4e-17 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g DCAR_008814 16 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 65 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-36 | 16 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.997 | 16 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-21 | 16 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.8E-12 | 17 | 28 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-30 | 17 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.92E-27 | 17 | 74 | No hit | No description |
Pfam | PF00847 | 1.0E-10 | 17 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-12 | 55 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MEKRKPRAQK QDKPNPYRGI RMRKWGKWVA EIREPNKRSR IWLGSYSSPV AAARAYDTAV 60 FYLRGPSARL NFPDILADHR DEGYSHHQEL SAAFIRQKAT EVGARVDALE LSADKSSRTF 120 LKPDLNEFPS PESSDDM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 13 | 73 | 2 | 63 | ATERF1 |
3gcc_A | 1e-14 | 13 | 73 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240430.1 | 1e-97 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | O22174 | 2e-48 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A165ZIA5 | 3e-96 | A0A165ZIA5_DAUCS; Uncharacterized protein | ||||
STRING | Solyc04g078640.1.1 | 3e-61 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400020525 | 3e-61 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 7e-51 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008814 |
Publications ? help Back to Top | |||
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