PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008751
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 389aa    MW: 42612.5 Da    PI: 5.1741
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008751genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.3e-063372440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
                  +C++++ +++   C + ++ lC++C    H +   H+++
  DCAR_008751 33 LICERCNLQPAFVRCVEESSSLCQNCDWVAHVNasgHKRE 72
                 58*************************9999667779876 PP
2CCT59.61e-20334376143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R+ a++RYkeK+ktRkF+K++rYe+RKa+A+ R+RvKGrF k+
  DCAR_008751 334 RNSAVQRYKEKKKTRKFDKRVRYETRKARADVRKRVKGRFIKA 376
                  999*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.1134IPR000315B-box-type zinc finger
CDDcd000211.06E-4234No hitNo description
PROSITE profilePS501199.2713074IPR000315B-box-type zinc finger
CDDcd000212.79E-53472No hitNo description
SMARTSM003360.193574IPR000315B-box-type zinc finger
PfamPF062031.9E-16334376IPR010402CCT domain
PROSITE profilePS5101715.299334376IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVYCQSDAAC LCLSCDRTVH SANPLSRRHP RTLICERCNL QPAFVRCVEE SSSLCQNCDW  60
VAHVNASGHK REAVKCYSGC PSANELSNIW SFLLDLPSAL ASTCEQGLSS MSIADDSLTN  120
ANAPARSNKD KGLSISVTDL QNVNSSKDWK SPSTPQLDEK FVHQQSVFTK PTSSKSGADE  180
LELYEDDFHE DFNMDELDSN IERCEELFGV GNNDPQQFFD NSGIDGLFEM KGMTGANTIS  240
PSAYVAEGSL IGLENVMKPT GSNASCADFM MSCKTNPSGC FGRQLSNISF SGVAGENINA  300
SDDQIADASA MLLMGEPPPW CSQGSESSLT SDTRNSAVQR YKEKKKTRKF DKRVRYETRK  360
ARADVRKRVK GRFIKAGDAF DYDPMTKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238354.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A165ZG540.0A0A165ZG54_DAUCS; Uncharacterized protein
STRINGXP_004154511.11e-132(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-83B-box type zinc finger protein with CCT domain