PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25633.3 Da PI: 6.0123 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 171 | 214 | 2 | 49 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 +ykGVr+++ +grWvAeIr p++ r+r++lg+++taeeAa a++ a DCAR_008717 171 QYKGVRQRH-WGRWVAEIRLPKN---RTRVWLGTYDTAEEAAMAYDIA 214 6*******9.**********965...5*******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-25 | 171 | 217 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-22 | 171 | 232 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.22E-26 | 171 | 214 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 171 | 216 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.282 | 171 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 172 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-13 | 172 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 194 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDIWEGNDNN SCRSNGSRDI FEGGELLEAL EPFIRSSSPS TPFSWSFPCF PLQTCTNVSV 60 LHQEDCSAPN SHLFPQGYSV QTHDQVLHQE DCSAPDSHLF PKRYSGSVQT HDQVGIDQPG 120 SFGLQRISTP ENHQIPAQVD HQYQQQQIQV GSGSGSGSGS GSASAVKPKN QYKGVRQRHW 180 GRWVAEIRLP KNRTRVWLGT YDTAEEAAMA YDIATILTII PTLLTTTGFA QL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB188291 | 0.0 | AB188291.1 Daucus carota C-EF3 mRNA for embryonic element binding Factor 3, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A162AEH4 | 1e-173 | A0A162AEH4_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 5e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008717 |