PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | B3 | ||||||||
Protein Properties | Length: 215aa MW: 24990.7 Da PI: 9.2864 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 43 | 141 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89 f+kvl +sdv++++rl++pk+fa +h ++ + + + ++d + W+++++++k+s++yv+t+ W++Fvka +L++gD+v+F+ ++g+++ DCAR_008571 43 FKKVLAKSDVGRLSRLIIPKRFAIQHfpsidvnARIEDCVFHIDFYDGLKNLWTFRYCFWKCSRSYVFTGAWNKFVKAYELQAGDSVLFYknYSGDES 140 89***************************999977778999*************************************************55555433 PP E CS B3 90 f 90 f DCAR_008571 141 F 141 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-28 | 36 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-25 | 41 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.86E-23 | 41 | 147 | No hit | No description |
Pfam | PF02362 | 2.1E-20 | 43 | 141 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-13 | 43 | 145 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.617 | 43 | 150 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMRYDTSLNC NAWLSAPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII 60 PKRFAIQHFP SIDVNARIED CVFHIDFYDG LKNLWTFRYC FWKCSRSYVF TGAWNKFVKA 120 YELQAGDSVL FYKNYSGDES FFGIEVRYAG ARNLVGSVTK NLNNVEEFMN DDTVRVKEEH 180 EVSASQLKEK DVMLFGVRIK RASKDFQGKN LIIM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-21 | 40 | 142 | 11 | 111 | DNA-binding protein RAV1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ149221 | 1e-41 | FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233805.1 | 1e-155 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
TrEMBL | A0A166FFT5 | 1e-158 | A0A166FFT5_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-25 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008571 |