PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008567
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 413aa    MW: 44642 Da    PI: 9.9659
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008567genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC696.2e-22108149142
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                  d+epgrCrRtDG kWRC+++v+++ k+CErH+hrgrsr+r +
  DCAR_008567 108 DPEPGRCRRTDGNKWRCRKDVIPNAKYCERHMHRGRSRKRVE 149
                  79*********************************9998754 PP
2WRC57.13.1e-18312353243
          WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                  +e  rC+RtDGK+WRCs+++++ +k+C++H+hrg++r ++s 
  DCAR_008567 312 DETQRCKRTDGKRWRCSKEAIPQQKYCDSHMHRGSKRCKSSS 353
                  5788********************************988876 PP
3QLQ29.52.3e-114374637
          QLQ  6 aQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 +Qlq+L +Q+ ++ y+a+++ +P+ L+ +i+k
  DCAR_008567 43 NQLQELHQQVVIFNYIASGVDIPSKLVGPIWK 74
                 7*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166614.2213974IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-54373IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166721.742108153IPR014977WRC domain
PfamPF088791.2E-17109147IPR014977WRC domain
PROSITE profilePS5166719.793311355IPR014977WRC domain
PfamPF088791.7E-14313352IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEHHCIGVNL VKKNYKGKEG AVKDESKFGL GICADVRPVI SVNQLQELHQ QVVIFNYIAS  60
GVDIPSKLVG PIWKRVASSV LGSVGSGISS SFSSYIRPRG ITYKSLMDPE PGRCRRTDGN  120
KWRCRKDVIP NAKYCERHMH RGRSRKRVET SNSPLQLNTP KITYPCSSTP TITFSRKASQ  180
KIKSHDHDDA ITKVSTPDPE KQQKKIPSSN ESKGLTCSTT AVATFSANGK SKTAGEFVEK  240
DKSSSRENSD SRNGVNTGSG DNKNKNDKGN STNGDKNGGP VTPELSISAK SVVDSVTVSS  300
FQVYEHRGVT ADETQRCKRT DGKRWRCSKE AIPQQKYCDS HMHRGSKRCK SSSKAEIVTA  360
ASEALASISA VKCAQPTVVN LDSSTSGSSS DAATVTDTDE NTSASHILPL PS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232230.10.0PREDICTED: growth-regulating factor 9-like
TrEMBLA0A166FFQ50.0A0A166FFQ5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.13e-25growth-regulating factor 3