PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008538
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 302aa    MW: 33367.2 Da    PI: 6.9984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008538genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-2092142155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp +   r r +lg+f+taeeAa  +++a+ kl+g
  DCAR_008538  92 KKFRGVRQRP-WGKWAAEIRDPMK---RVRLWLGTFDTAEEAAMVYDHAAIKLRG 142
                  59********.**********854...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.83E-3492149No hitNo description
PfamPF008473.8E-1293142IPR001471AP2/ERF domain
SMARTSM003801.8E-3893156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3093150IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2293150IPR016177DNA-binding domain
PROSITE profilePS5103223.55193150IPR001471AP2/ERF domain
PRINTSPR003671.4E-1094105IPR001471AP2/ERF domain
PRINTSPR003671.4E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLSRVKCTEH RTQTTMFSSR ADRGVSRVVR ISVTDPDATD SSSDEEGPTF NRRKMKRYVN  60
EVTIKSSRSN PRKKIAGKSR KEAPAIKQNP SKKFRGVRQR PWGKWAAEIR DPMKRVRLWL  120
GTFDTAEEAA MVYDHAAIKL RGPHALTNFS KPPSKAVPEK TPSPTCSGYD SGVESNNTTP  180
NICSPKSVLG FVTVSNEESN NDDTKSTSTV TDTVKVAESF TDFLGTNDGT NAPLFTENLF  240
DFHCSPLDLF DQMGKTMFDD CCSDMFFGSG HDFGFGSSSW VDDDCFQDFG DIFGSDPLVA  300
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2292149159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232646.10.0PREDICTED: ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ26e-65CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A166FEX10.0A0A166FEX1_DAUCS; Uncharacterized protein
STRINGXP_009763317.11e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-58cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]