PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008521
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 110aa    MW: 12613.7 Da    PI: 11.0092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008521genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-192575255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+++Ae rdp+ +g   r++lg++ t+ eAaka+++a+ kl+g
  DCAR_008521 25 HYRGVRRRP-WGKFAAEMRDPKRRG--SRIWLGTYVTPIEAAKAYDRAAYKLRG 75
                 7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-302484IPR001471AP2/ERF domain
PROSITE profilePS5103223.3542583IPR001471AP2/ERF domain
PfamPF008471.1E-132575IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-222585IPR016177DNA-binding domain
CDDcd000184.45E-252583No hitNo description
SMARTSM003803.5E-342589IPR001471AP2/ERF domain
PRINTSPR003675.0E-142637IPR001471AP2/ERF domain
PRINTSPR003675.0E-146585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAEKLSEEKF ANPNEIVEKE NIIRHYRGVR RRPWGKFAAE MRDPKRRGSR IWLGTYVTPI  60
EAAKAYDRAA YKLRGSKAIL NFPLELNKVA GLDQLVAKTI MRGAKEKKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-292487467ATERF1
3gcc_A8e-292487467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234624.19e-76PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9LW483e-33ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A166FEA96e-73A0A166FEA9_DAUCS; Uncharacterized protein
STRINGXP_008234445.12e-36(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-35ERF family protein