PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 465aa MW: 52119.7 Da PI: 7.0224 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 321.4 | 1.8e-98 | 106 | 463 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++L+++ e + sg ++ aqa+Larl+++ s + +p+qR+a+yf+eAL+ l+ s+ ++ +p+++ ++ + ++ a+k++sevsP+++f ++t Nq DCAR_008485 106 DQLYKATELILSGTFSHAQAILARLNHQLSLNIKPFQRAAFYFKEALQMSLLM-ISNPVSPIPSRTPTPVDGMFKIGAYKVLSEVSPLIQFMNFTSNQ 202 689*************************************************7.777777999999999***************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 a+leav +++ +HiiDfdi+ G+QW ++lq+L R++gppsl+iT+++sp++++ el ++e+L++fA+++gv+fe +v+ +++++++++ +v++ DCAR_008485 203 ALLEAVGNADSIHIIDFDIGFGAQWSSFLQELPRRDSGPPSLKITAFASPTTHHPIELGLMHENLTQFATKIGVSFELEVV---NFDSFDPNSYSVSS 297 ********************************************************************************8...9***********99 PP GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +Ea+aVn+ + + + l+ +++++++k+lsPk++v +++ +++ + + +++l++++yy lfdsl+a ++++ +k+E++l++++i+ DCAR_008485 298 dNEAVAVNFPIWSSSSH-----LPA-LPSLVSFIKQLSPKIMVSMDRGCERIDLPCPQHLLHTFQYYEILFDSLDAA-NVTTDTVTKIEKFLFQPKIE 388 9********99555544.....333.567*********************************************666.468999************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++v + e+ W++ + ++GF+pv++s++a++qa++l+++++++g++ve++++slvl+W++r+L+s+SaWr DCAR_008485 389 SMVLGRLHF----PEHTLPWKSLFASMGFSPVAFSNFAETQAEYLVKRTQVRGFHVEKRQASLVLCWQHRELMSASAWR 463 ***987776....88889************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.599 | 78 | 443 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-96 | 106 | 463 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MSSTLLLANS NFSQKEQHQF EPQLKRHNLG LTSCSTGVTK IPFVDEVLST KQQTQIGFAN 60 QLNLLPTHQL LQKPFVPPNQ DLTGGVREQI SAASHLHQQQ QQVIYDQLYK ATELILSGTF 120 SHAQAILARL NHQLSLNIKP FQRAAFYFKE ALQMSLLMIS NPVSPIPSRT PTPVDGMFKI 180 GAYKVLSEVS PLIQFMNFTS NQALLEAVGN ADSIHIIDFD IGFGAQWSSF LQELPRRDSG 240 PPSLKITAFA SPTTHHPIEL GLMHENLTQF ATKIGVSFEL EVVNFDSFDP NSYSVSSDNE 300 AVAVNFPIWS SSSHLPALPS LVSFIKQLSP KIMVSMDRGC ERIDLPCPQH LLHTFQYYEI 360 LFDSLDAANV TTDTVTKIEK FLFQPKIESM VLGRLHFPEH TLPWKSLFAS MGFSPVAFSN 420 FAETQAEYLV KRTQVRGFHV EKRQASLVLC WQHRELMSAS AWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-33 | 123 | 463 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236616.1 | 0.0 | PREDICTED: scarecrow-like protein 6 isoform X1 | ||||
Swissprot | O81316 | 1e-114 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A166FDD6 | 0.0 | A0A166FDD6_DAUCS; Uncharacterized protein | ||||
STRING | VIT_02s0154g00400.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6986 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-110 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008485 |
Publications ? help Back to Top | |||
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