PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008421

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 671aa MW: 75168.3 Da PI: 5.8946

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008421	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	419.9	2.2e-128	286	654	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+lL++c +a++ ++ e +++++a+l elasp+g+++ Rl+ayfteA+a r+ar +++++ + +p+e + + ++e+ +al+l+++vsPi++f h+ta DCAR_008421 286 LVSLLMACIDAIHLKNIEGVNHFIAKLGELASPRGSSISRLTAYFTEAMALRVARVWPHIFYINTPRELN-SAEEESGTALRLLNQVSPIPQFIHFTA 382 689********************************************************999999998.6788889999************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+ +eg++rvHiiDfdi+qGlQWp+++q+La R+++p ++RiTg+g+ sk+ l etgerLa fA++l+++fef++ v++rled++l++L+v DCAR_008421 383 NEVLLRGFEGKDRVHIIDFDIKQGLQWPSFFQSLAFRNNPPSHVRITGIGE----SKQDLIETGERLAGFARALNLQFEFHP-VVDRLEDVRLWMLHV 475 ***********************************************....9**********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k+gE++aVn+++qlh++l + +s ++L l++s++P++vv++eqeadhn +s+ +r+ ++l+yy a+fdsl+ +lp++s +rik+E++ +grei DCAR_008421 476 KEGECVAVNCIFQLHKMLYD-GSGGI-LMDFLGLLRSTNPTIVVMAEQEADHNYQSLETRLYNSLKYYGAIFDSLDLGLPQDSLARIKIEEM-FGREI 570 *************954.44444.579**********************************************************.* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaW 373 +n+++ceg++r erhe+++kW++ +e+ GF+++ ++e++ q ++ll+++++d yrve++ s +l+l W+d++L++vSaW DCAR_008421 571 KNIISCEGRDRLERHENFGKWSHLMESGGFRNIGITEREFLQSRMLLKMYSFDNYRVEKQglddgSSALTLSWSDQSLYTVSAW 654 ***********************************************999887877788889************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.893	260	630	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-126	286	654	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MLAGCPSTLL SPRHRLRSEA SAQFQACHFP SMSTQRLELP CSFTRKETSR SQSIRPVVNL 60 SIEKPAEART SSCSLKKSIS LPPLTTAGQV VFHDGRLERR DEFRDKNKNR LKRFADENFF 120 DEDINRAKKI RGSRKYDDSS EGGENLCLDQ HWFHQSFEVP TSVSQFSGLN PQQAPFSLVY 180 SEEEDTCVAS SKVTISPLPN NPWAESVVTE FPKLGERDVE PSQAIAKEAS ESSTSSGSDN 240 NLANRVHDDA TEHEIGNVSR PHNPNGSTGF VAGSSDGNGD HDGFELVSLL MACIDAIHLK 300 NIEGVNHFIA KLGELASPRG SSISRLTAYF TEAMALRVAR VWPHIFYINT PRELNSAEEE 360 SGTALRLLNQ VSPIPQFIHF TANEVLLRGF EGKDRVHIID FDIKQGLQWP SFFQSLAFRN 420 NPPSHVRITG IGESKQDLIE TGERLAGFAR ALNLQFEFHP VVDRLEDVRL WMLHVKEGEC 480 VAVNCIFQLH KMLYDGSGGI LMDFLGLLRS TNPTIVVMAE QEADHNYQSL ETRLYNSLKY 540 YGAIFDSLDL GLPQDSLARI KIEEMFGREI KNIISCEGRD RLERHENFGK WSHLMESGGF 600 RNIGITEREF LQSRMLLKMY SFDNYRVEKQ GLDDGSSALT LSWSDQSLYT VSAWAPLDIA 660 GSSTSYSQPS *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MLAGCPSTLL SPRHRLRSEA SAQFQACHFP SMSTQRLELP CSFTRKETSR SQSIRPVVNL  60
SIEKPAEART SSCSLKKSIS LPPLTTAGQV VFHDGRLERR DEFRDKNKNR LKRFADENFF  120
DEDINRAKKI RGSRKYDDSS EGGENLCLDQ HWFHQSFEVP TSVSQFSGLN PQQAPFSLVY  180
SEEEDTCVAS SKVTISPLPN NPWAESVVTE FPKLGERDVE PSQAIAKEAS ESSTSSGSDN  240
NLANRVHDDA TEHEIGNVSR PHNPNGSTGF VAGSSDGNGD HDGFELVSLL MACIDAIHLK  300
NIEGVNHFIA KLGELASPRG SSISRLTAYF TEAMALRVAR VWPHIFYINT PRELNSAEEE  360
SGTALRLLNQ VSPIPQFIHF TANEVLLRGF EGKDRVHIID FDIKQGLQWP SFFQSLAFRN  420
NPPSHVRITG IGESKQDLIE TGERLAGFAR ALNLQFEFHP VVDRLEDVRL WMLHVKEGEC  480
VAVNCIFQLH KMLYDGSGGI LMDFLGLLRS TNPTIVVMAE QEADHNYQSL ETRLYNSLKY  540
YGAIFDSLDL GLPQDSLARI KIEEMFGREI KNIISCEGRD RLERHENFGK WSHLMESGGF  600
RNIGITEREF LQSRMLLKMY SFDNYRVEKQ GLDDGSSALT LSWSDQSLYT VSAWAPLDIA  660
GSSTSYSQPS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-65	280	656	13	380	Protein SCARECROW
5b3h_A	7e-65	280	656	12	379	Protein SCARECROW
5b3h_D	7e-65	280	656	12	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017235778.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A166FBC7	0.0	A0A166FBC7_DAUCS; Uncharacterized protein
STRING	Solyc08g080400.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5568	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	DCAR_008421