PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008419

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 646aa MW: 72495.6 Da PI: 5.8678

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008419	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	414.4	1e-126	260	629	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+lL++c +a++ ++ e +++++a+l elasp+g+++ Rl+ayfteALa r+ar +++++ + + e + + ++e+ +al+l++++sPi++f h+ta DCAR_008419 260 LVSLLIACINAIDLKNIEGVNHFIAKLGELASPRGSSLSRLTAYFTEALALRVARVWPHIFYINTLCELN-SAEEESGTALRLLNQISPIPQFIHFTA 356 689********************************************************888777776.678899999************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+ +eg++rvHiiDfdi+qGlQWp+++q+La R+++p ++RiTg+g+ sk+ l etgerLa fA++l+++fef++ v++rled++l++L+v DCAR_008419 357 NEVLLRGFEGKDRVHIIDFDIKQGLQWPSFFQSLAYRNNPPSHVRITGIGE----SKQDLIETGERLAGFARALNLQFEFHP-VVDRLEDVRLWMLHV 449 ***********************************************....9**********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k+gE++aVn+++qlh++l + +s +++ l++s++P+vvv++eqeadhn +++ rf ++l+yy a+fdsl+ lp++s +rik+E++ ++rei DCAR_008419 450 KEGECVAVNCIFQLHKMLYD-GSGGI-LMDFMGLLRSTNPTVVVMAEQEADHNCHRLESRFYNSLKYYGAIFDSLDLCLPQDSLARIKIEEM-FAREI 544 *************954.44444.579**********************************************************.* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaW 373 +n+++ceg++r erhe+++kWr+ +e+ GF+++ +++++ q ++ll+++++d +rve++ +l+l W+d+pL++vSaW DCAR_008419 545 KNIISCEGRDRLERHENFGKWRKLMETGGFRNIGITDREFLQSRMLLKMYSFDNFRVEKQqghldgCSALTLNWSDQPLYTVSAW 629 ***********************************************9999855553233467************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.716	234	604	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-124	260	629	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MSTQRLELPC SFTRKETSRS QSIRPVVNLS IEKPAEARTS SCSLRKSISL PPLTSTGPVV 60 FHDSKLEKKD EFRDKSKNRL KRFVDENFFD KDDSCISRAK KIRGSRKYDD SLEGGEKLCL 120 DQLWFRQSFE VPTSVSQFSG LNPQQSPFSL LCSEEEETCF APSKVTATTS PLPNNPWANS 180 VVTEFPKLGE RNVEPSQAIA KEASESSTSS GSDNNLENRL HEDANEHEIG NGSSPNNPNG 240 STGFVAGSSD DNGDHDGFEL VSLLIACINA IDLKNIEGVN HFIAKLGELA SPRGSSLSRL 300 TAYFTEALAL RVARVWPHIF YINTLCELNS AEEESGTALR LLNQISPIPQ FIHFTANEVL 360 LRGFEGKDRV HIIDFDIKQG LQWPSFFQSL AYRNNPPSHV RITGIGESKQ DLIETGERLA 420 GFARALNLQF EFHPVVDRLE DVRLWMLHVK EGECVAVNCI FQLHKMLYDG SGGILMDFMG 480 LLRSTNPTVV VMAEQEADHN CHRLESRFYN SLKYYGAIFD SLDLCLPQDS LARIKIEEMF 540 AREIKNIISC EGRDRLERHE NFGKWRKLME TGGFRNIGIT DREFLQSRML LKMYSFDNFR 600 VEKQQGHLDG CSALTLNWSD QPLYTVSAWA PLDIAGSSAS HSQPS*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MSTQRLELPC SFTRKETSRS QSIRPVVNLS IEKPAEARTS SCSLRKSISL PPLTSTGPVV  60
FHDSKLEKKD EFRDKSKNRL KRFVDENFFD KDDSCISRAK KIRGSRKYDD SLEGGEKLCL  120
DQLWFRQSFE VPTSVSQFSG LNPQQSPFSL LCSEEEETCF APSKVTATTS PLPNNPWANS  180
VVTEFPKLGE RNVEPSQAIA KEASESSTSS GSDNNLENRL HEDANEHEIG NGSSPNNPNG  240
STGFVAGSSD DNGDHDGFEL VSLLIACINA IDLKNIEGVN HFIAKLGELA SPRGSSLSRL  300
TAYFTEALAL RVARVWPHIF YINTLCELNS AEEESGTALR LLNQISPIPQ FIHFTANEVL  360
LRGFEGKDRV HIIDFDIKQG LQWPSFFQSL AYRNNPPSHV RITGIGESKQ DLIETGERLA  420
GFARALNLQF EFHPVVDRLE DVRLWMLHVK EGECVAVNCI FQLHKMLYDG SGGILMDFMG  480
LLRSTNPTVV VMAEQEADHN CHRLESRFYN SLKYYGAIFD SLDLCLPQDS LARIKIEEMF  540
AREIKNIISC EGRDRLERHE NFGKWRKLME TGGFRNIGIT DREFLQSRML LKMYSFDNFR  600
VEKQQGHLDG CSALTLNWSD QPLYTVSAWA PLDIAGSSAS HSQPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-64	254	631	13	380	Protein SCARECROW
5b3h_A	2e-64	254	631	12	379	Protein SCARECROW
5b3h_D	2e-64	254	631	12	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231370.1	0.0	PREDICTED: scarecrow-like protein 28
Refseq	XP_017231371.1	0.0	PREDICTED: scarecrow-like protein 28
Refseq	XP_017231372.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A166FBB2	0.0	A0A166FBB2_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400007879	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5568	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	DCAR_008419