PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008393

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 183aa MW: 19445.2 Da PI: 9.5662

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008393	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108	1.5e-33	42	115	4	83
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 k + +h+kv+gR RRvR++a caar+F+L++eLG+++d++tieWLl+qa+p+i+ +tgt++++a+ + +s+ DCAR_008393 42 NKPVAKERHSKVNGRARRVRMPAVCAARVFQLTRELGHKTDGQTIEWLLRQAEPEIINATGTGTKPAQLS------VSSP 115 678899********************************************************99999222......1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.0E-29	46	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.833	46	100	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MASFSKPAVS IEAAASHNAL IPKDSLSAAK GKKRVVKEGK ANKPVAKERH SKVNGRARRV 60 RMPAVCAARV FQLTRELGHK TDGQTIEWLL RQAEPEIINA TGTGTKPAQL SVSSPAKPAS 120 EASVAAPLSG SVMNPENFVQ GGNGLGVAPE VEYQTGGFMS LLMDPMIGEE ELQQHEEYLL 180 QM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233776.1	1e-132	PREDICTED: transcription factor TCP21-like
Refseq	XP_017233778.1	1e-132	PREDICTED: transcription factor TCP21-like
TrEMBL	A0A166FAM0	1e-130	A0A166FAM0_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-38	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_008393