PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 24118.9 Da PI: 5.4067 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.7e-20 | 116 | 167 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp +ng +r++lg++g+ae+Aa a+++a+ +++g+ DCAR_008342 116 KYRGVRQRP-WGRFAAEIRDPAKNG--TRVWLGTYGSAEDAALAYDKAAFRMRGA 167 8********.***********9987..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 115 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 116 | 175 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-38 | 116 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.97E-32 | 116 | 174 | No hit | No description |
Pfam | PF00847 | 8.2E-15 | 116 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.854 | 116 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-13 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-13 | 156 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDNNMSFDSD FSFLDSIRRH LLDDHAAADT NPSNSPAIYC RSDPSSTDNN NSRELELKLN 60 DNDSQNMVLN DMLNDAVNIG SMSSMQEPIC DVKCEADQNY INQAAVEVAA QPYMRKYRGV 120 RQRPWGRFAA EIRDPAKNGT RVWLGTYGSA EDAALAYDKA AFRMRGARAI LNFPLLVNSG 180 LPEPVKVVDK RYSESSECSW EENVSPKKRK RVVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-35 | 115 | 180 | 4 | 69 | ATERF1 |
3gcc_A | 4e-35 | 115 | 180 | 4 | 69 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234188.1 | 1e-159 | PREDICTED: ethylene-responsive transcription factor 1A-like | ||||
TrEMBL | A0A166F9D9 | 1e-157 | A0A166F9D9_DAUCS; Uncharacterized protein | ||||
STRING | XP_004152388.1 | 8e-56 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 4e-38 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008342 |