PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008333
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 560aa    MW: 61610.2 Da    PI: 6.8695
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008333genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.51e-14741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  DCAR_008333  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                 99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-8155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-10545No hitNo description
CDDcd002024.97E-16654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.9E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-12740IPR013088Zinc finger, NHR/GATA-type
PfamPF139192.9E-10299384IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RAEPDDLEEY  60
RIRRVKTISL KNKEAKVLKR KQNHTSQVGG GAAYEYNQGF LKGGGPSGVA LDYSRTFRKV  120
LDEDTSNRSS SGSAISNSES CLQLANADAS DLTGPAQSII WDTMVPSRKR TCVNHPKQSS  180
VEKLTKDLYT ILHEQQSYLS GSSEEDLLID SDTPMVSVEI GHGSVLIRHP STIAREEESE  240
ASSLSVDNKH HSISEAYSQF SSLPVQTSSK GVNFSSPGVE RANKLGPGMK QDLLIREKVQ  300
EEKMQLLANH GSPLCDIELK DVLNFEEFER LMTYDEQQQL LKYLPSVDTV AIPDSLKSMF  360
DSPQFIEDLS MFQKLLAEGV FDFSPSGKTK SEGSGNLKRL VLCNLTRSTW VEHYNLLKDV  420
KCDNSPGSAF VAAGPAAVAS AQSMKVKRSR DIQFQNYPGG KTTMKSPKRV STKANYDNKE  480
LIDNDATCFS PKSLFALPTD NSSLMLDSFR FDDHSDQELL LNVPSHSSFP QAELLMPASS  540
FNAQASTSSS SIYQNHVRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236942.10.0PREDICTED: GATA transcription factor 26-like
TrEMBLA0A166F9530.0A0A166F953_DAUCS; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-140GATA transcription factor 26