PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008250
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 338aa    MW: 37739.3 Da    PI: 7.004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008250genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.8e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d++++ Gg+ +W++ ++  g++R++k+c++rw +yl
      DCAR_008250 14 KGPWTPEEDKILMDYIRENGGHgSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79*******************9*************************97 PP
2Myb_DNA-binding48.32.3e-1568112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+  +++++   G++ W+ Ia++++ gRt++++k++w+++
      DCAR_008250  68 RGKFSDEEERMIINLHSAIGNK-WSQIAAHLP-GRTDNEIKNFWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.969962IPR017930Myb domain
SMARTSM007172.7E-121364IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-2813109IPR009057Homeodomain-like
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-231569IPR009057Homeodomain-like
CDDcd001671.53E-81662No hitNo description
PROSITE profilePS5129425.49763117IPR017930Myb domain
SMARTSM007171.6E-1567115IPR001005SANT/Myb domain
PfamPF002493.3E-1468112IPR001005SANT/Myb domain
CDDcd001671.16E-1070113No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2770118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRSPSPSDE CVKKGPWTPE EDKILMDYIR ENGGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSDEEERMII NLHSAIGNKW SQIAAHLPGR TDNEIKNFWN THVRKKLVNS  120
GIDPKTHEPL IINHLNSFLA NYSQLLSSPS NLSNLVIANP LESALAGLRS FLPQPAPNIQ  180
LLQNLWQIVN CTNPLPNAIQ KNSLLQSSLL SKCSGLKNIG SSVTDNQNSF TYANTNVHPQ  240
RLGEDFANNN SSEFHIIGGL RQEFSHKDAI RNSSQKENML PSLVSATDTG SSGVTQMNEA  300
RFSTETAAAS NMFGNWEERL DDEDWGNDFW EDLIKDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
1h8a_C6e-251411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234555.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF33e-68MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A162AXW80.0A0A162AXW8_DAUCS; Uncharacterized protein
STRINGEOY251396e-83(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.18e-69myb domain protein 107
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]