PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 334aa    MW: 37345.9 Da    PI: 6.7401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008249genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d++++ Gg+ +W++ ++  g++R++k+c++rw +yl
      DCAR_008249 14 KGPWTPEEDKILMDYIHENGGHgSWSALPKLAGLNRCGKSCRLRWTNYL 62
                     79*******************9*************************97 PP

2Myb_DNA-binding48.32.3e-1568112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+  +++++   G++ W+ Ia++++ gRt++++k++w+++
      DCAR_008249  68 RGKFSDEEERMIINLHSAIGNK-WSQIAAHLP-GRTDNEIKNFWNTH 112
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.646962IPR017930Myb domain
SuperFamilySSF466892.1E-2813109IPR009057Homeodomain-like
SMARTSM007171.6E-121364IPR001005SANT/Myb domain
PfamPF002495.1E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-241569IPR009057Homeodomain-like
CDDcd001673.12E-91662No hitNo description
PROSITE profilePS5129425.67963117IPR017930Myb domain
SMARTSM007171.2E-1567115IPR001005SANT/Myb domain
PfamPF002493.3E-1468112IPR001005SANT/Myb domain
CDDcd001674.03E-1170113No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2770118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRSPSPSNE CVKKGPWTPE EDKILMDYIH ENGGHGSWSA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSDEEERMII NLHSAIGNKW SQIAAHLPGR TDNEIKNFWN THVRRKLVNS  120
GIDPKTHEPL IINHLNSFLA NYSQLLSTSN LSNLVIANPL ESALASLRSF LPQPAPNIQL  180
LQNLWQIINS PNPLPNSIQE NSLLQSSILS PGSGLISGTN AAYNHYTFTS PNTHVHPQRR  240
PGEDHAFNNL SAFNMEGGLR PELFYNDTDI RNNSQKESML PSSVSESVGV EQMNRTCFPA  300
ETPAASNMVR TWEELLNDED GGNDFWKDLI KDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233752.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z23e-68MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A166F6W00.0A0A166F6W0_DAUCS; Uncharacterized protein
STRINGVIT_02s0012g01650.t012e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-68myb domain protein 53
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]