PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 37345.9 Da PI: 6.7401 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d++++ Gg+ +W++ ++ g++R++k+c++rw +yl DCAR_008249 14 KGPWTPEEDKILMDYIHENGGHgSWSALPKLAGLNRCGKSCRLRWTNYL 62 79*******************9*************************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+ +++++ G++ W+ Ia++++ gRt++++k++w+++ DCAR_008249 68 RGKFSDEEERMIINLHSAIGNK-WSQIAAHLP-GRTDNEIKNFWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.646 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.679 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGRSPSPSNE CVKKGPWTPE EDKILMDYIH ENGGHGSWSA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSDEEERMII NLHSAIGNKW SQIAAHLPGR TDNEIKNFWN THVRRKLVNS 120 GIDPKTHEPL IINHLNSFLA NYSQLLSTSN LSNLVIANPL ESALASLRSF LPQPAPNIQL 180 LQNLWQIINS PNPLPNSIQE NSLLQSSILS PGSGLISGTN AAYNHYTFTS PNTHVHPQRR 240 PGEDHAFNNL SAFNMEGGLR PELFYNDTDI RNNSQKESML PSSVSESVGV EQMNRTCFPA 300 ETPAASNMVR TWEELLNDED GGNDFWKDLI KDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 14 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233752.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 3e-68 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A166F6W0 | 0.0 | A0A166F6W0_DAUCS; Uncharacterized protein | ||||
STRING | VIT_02s0012g01650.t01 | 2e-87 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 1e-68 | myb domain protein 53 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008249 |
Publications ? help Back to Top | |||
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