PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008094

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB

Protein Properties

Length: 218aa MW: 25281.6 Da PI: 4.6352

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008094	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.1	4.2e-13	9	50	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +lv ++ ++G+ +W+ ++ g+ R++k+c++rw+ DCAR_008094 9 WTPEEDMRLVTYISRYGTWNWTQMPALAGLSRSGKSCRLRWY 50 *****************************************8 PP
2	Myb_DNA-binding	35.7	2e-11	60	102	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eEde+++++ + G g W++Ia +++ gRt++++k+rw++ DCAR_008094 60 RGNYTREEDEIIINL-RSIGAG-WSAIALRLP-GRTDNEIKNRWHS 102 899**********8.77899.*******.*********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.311	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.07E-22	5	100	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-7	5	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-11	8	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-18	9	61	IPR009057	Homeodomain-like
CDD	cd00167	6.62E-8	9	50	No hit	No description
PROSITE profile	PS51294	13.94	59	108	IPR017930	Myb domain
SMART	SM00717	1.0E-7	59	106	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-10	60	102	IPR001005	SANT/Myb domain
CDD	cd00167	1.71E-8	62	104	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-18	62	107	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MATFRKCLWT PEEDMRLVTY ISRYGTWNWT QMPALAGLSR SGKSCRLRWY LNYLDPRVKR 60 GNYTREEDEI IINLRSIGAG WSAIALRLPG RTDNEIKNRW HSKLIKKQIA NDMAVETMAP 120 IIERIEAEID ADLFPEAPDL EEDYPISSDI LNMNVYLNDK PVPPTFADAH TSFWREPFSF 180 ENIYDIDEYA AYVDPQIGMT YPQNWFGGPF NSYYGVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-21	9	107	10	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233720.1	1e-162	PREDICTED: transcription repressor MYB4-like
TrEMBL	A0A166F2B9	1e-160	A0A166F2B9_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	5e-37	myb domain protein 15

Link Out ? help Back to Top
Phytozome	DCAR_008094