PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008093
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 223aa    MW: 25945.2 Da    PI: 6.6262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008093genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-16753248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WT eEd +lv+++ ++G  +W+  +++ g+ Rt+k+c++rw +yl
      DCAR_008093  7 CPWTREEDMRLVNYISKHGIWNWSQMPKHAGLSRTGKSCRLRWMNYL 53
                     69*****************99************************97 PP
2Myb_DNA-binding33.78.3e-1159101146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eEde+++   +  G g W++Ia+ ++ gR+++++k+rw++
      DCAR_008093  59 RGNYSEEEDEIIISMRHD-GAG-WSSIAESLP-GRSDNEIKNRWHS 101
                      899***********8666.667.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.679157IPR017930Myb domain
SuperFamilySSF466894.87E-26499IPR009057Homeodomain-like
SMARTSM007171.6E-12555IPR001005SANT/Myb domain
PfamPF002491.1E-13653IPR001005SANT/Myb domain
CDDcd001671.03E-10853No hitNo description
Gene3DG3DSA:1.10.10.604.9E-24860IPR009057Homeodomain-like
SMARTSM007176.4E-858105IPR001005SANT/Myb domain
PROSITE profilePS5129412.8958107IPR017930Myb domain
PfamPF002491.0E-959101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2061107IPR009057Homeodomain-like
CDDcd001672.21E-861103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MASSKKCPWT REEDMRLVNY ISKHGIWNWS QMPKHAGLSR TGKSCRLRWM NYLDPRVKRG  60
NYSEEEDEII ISMRHDGAGW SSIAESLPGR SDNEIKNRWH SRLSKRLASD MVQIMKPYRE  120
QIVSDLKAMM NNDDSLIPEA SQVEVACEDY PLPSHILNIG GLSSNIAPPT CADPHIRFWR  180
DPYSLENIYD TDEYATYAYP VFGTPKLHDW FRESFYPYYQ QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-24610727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233719.11e-167PREDICTED: myb-related protein 340-like
SwissprotQ9LTC43e-37MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A166F2A41e-166A0A166F2A4_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.11e-39myb domain protein 58
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]