PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 410aa MW: 46559 Da PI: 4.8629 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.1e-18 | 80 | 127 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++lvd++++ G g+W+t ++ g+ R++k+c++rw +yl DCAR_008083 80 KGPWTTEEDQKLVDYIQKNGYGNWRTLPKNAGLERCGKSCRLRWTNYL 127 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 6.9e-18 | 133 | 177 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e ++++++ lG++ W+tIa++++ gRt++++k++w+++ DCAR_008083 133 RGRFSLEEEEAIIQLHRVLGNK-WSTIASRLP-GRTDNEIKNYWNTH 177 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.678 | 75 | 127 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 77 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 79 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 80 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 81 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.24E-11 | 82 | 127 | No hit | No description |
PROSITE profile | PS51294 | 26.414 | 128 | 182 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 132 | 180 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 133 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.03E-12 | 135 | 178 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 135 | 182 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEVGDISIDD YKLSYYVMSI YVAEDTKVNK VWTELEGYIK KLVHAEVYVE SKEEGNVEGA 60 SAMNRTSFLG LTGAKNGLKK GPWTTEEDQK LVDYIQKNGY GNWRTLPKNA GLERCGKSCR 120 LRWTNYLRPD IKRGRFSLEE EEAIIQLHRV LGNKWSTIAS RLPGRTDNEI KNYWNTHIRK 180 RLLRMGIDPV THNPRLDLLD LSSILSQPLY NPSQMNISRL LGVQTLLNPE LLRLATSLFS 240 SSQRHQNPNF LQQNVQQNNP ISSNSDQLVT NNQLMPPSMQ PSQAQEFQTF VPFTNDAQAQ 300 FMEPQFTELL NDWGQCNELA NGNYPDFQNY GYYGLDQFVP SMPSETSDFQ SNGSNNMTSF 360 TNISSTPASS PTHINSTSTI AAEEETENYS ISSMLKFEIP DSFDLDCFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 78 | 182 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017231951.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | Q9LDR8 | 1e-100 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A166F214 | 0.0 | A0A166F214_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.009G174500.1 | 1e-123 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-90 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008083 |
Publications ? help Back to Top | |||
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