PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23037.5 Da PI: 5.4027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp +k++r++lg+f+tae Aa+a++ a+++++g DCAR_008017 31 HYRGVRKRP-WGRYAAEIRDP---NKKARVWLGTFDTAELAARAYDDAAREFRG 80 6********.**********9...347************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-21 | 31 | 89 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-36 | 31 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-14 | 31 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.881 | 31 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.07E-20 | 31 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-11 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MATAASETVE DAANGKESSK GVEVGGGEEV HYRGVRKRPW GRYAAEIRDP NKKARVWLGT 60 FDTAELAARA YDDAAREFRG DKAKTNFPAP DTRRNDGEIQ VSQSPSPTST VESSSQERFA 120 AAVNPNLAVL NGGVGSWLGY GSGYGLPLMY PYYCKPYGPM QGYGLPPMLY RNPEFRANLL 180 AARSDSASSS VVDVNPTRKG LDLDLNLPPP SED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 31 | 98 | 5 | 70 | ATERF1 |
3gcc_A | 4e-21 | 31 | 98 | 5 | 70 | ATERF1 |
5wx9_A | 1e-20 | 26 | 88 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232340.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A166EZY1 | 1e-154 | A0A166EZY1_DAUCS; Uncharacterized protein | ||||
STRING | Solyc10g009110.1.1 | 8e-42 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-23 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008017 |