PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24021.1 Da PI: 10.0252 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.5e-16 | 37 | 87 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y GVr++ +g++vAeI++p + +++++lg+f tae+Aa a+++a+++l+g+ DCAR_008014 37 RYIGVRRRL-SGKYVAEIKHPLK---NANVWLGTFETAEQAAMAYDEAARELRGN 87 699***888.8*********865...4**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.04E-23 | 37 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-27 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-28 | 37 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-11 | 37 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.52 | 37 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-19 | 37 | 95 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-6 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MASKEKVAES SKAVEAGASA VVSAKAVEAG GSREEVRYIG VRRRLSGKYV AEIKHPLKNA 60 NVWLGTFETA EQAAMAYDEA ARELRGNKTR TNFPLPDAFY QRRNVGQTKL SKILIPKSTG 120 KSADQERFSA AVRPTLATVT GGAGSWIGYG SSYGLSPMYP YHRLPYVPMQ WGFPPMLNRS 180 PEFRTNLLPA QSDSDSSSVI AGNPTRKGLD IDLNLPPPSE D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-16 | 38 | 95 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-16 | 38 | 95 | 6 | 64 | ATERF1 |
3gcc_A | 4e-16 | 38 | 95 | 6 | 64 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233704.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A166EZW1 | 1e-161 | A0A166EZW1_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 5e-15 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008014 |