PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WOX | ||||||||
Protein Properties | Length: 304aa MW: 33162 Da PI: 9.2636 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.8 | 9e-09 | 3 | 40 | 24 | 57 |
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +p ++e++++ ++l ++ +++V++WFqN++ + k+ DCAR_007980 3 TPPRDEIRRIRAQLeeygEIGDANVFYWFQNKKSRSKN 40 7999*******************************995 PP | |||||||
2 | Wus_type_Homeobox | 67 | 3.5e-22 | 1 | 42 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tP+++ei+ri+a+LeeyG+i+d+NVfyWFQN+k+R+++k+ DCAR_007980 1 MVTPPRDEIRRIRAQLEEYGEIGDANVFYWFQNKKSRSKNKK 42 79*************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 2.7E-6 | 3 | 39 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVTPPRDEIR RIRAQLEEYG EIGDANVFYW FQNKKSRSKN KKTSNFLNST TKSRKRTVSK 60 PNTSQLSYTS SSSSDKSLQK SSPGEFMPEP YSFHASQSTL VGGAIAGNAA VGTPLIRGLC 120 SPQVISSNVD YVAQYNNSRH NLSECHGQTY GKCSAASVVV ADLINHEAPN NYHKRGEDND 180 QMKMQRQLSY NSVTTTPTPI SAQTILPPTV VSNINHIQAE GIRKCTVFIN DVAFEVASGP 240 FDVRGAFGED AVLLHSSGQP VVTNQCGVTL HSLQHGAFYY LFRMRTPSST SQTHGSGQYL 300 SIG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 39 | KKSRSKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234211.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9-like isoform X1 | ||||
Refseq | XP_017234212.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9-like isoform X1 | ||||
Refseq | XP_017234213.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9-like isoform X2 | ||||
TrEMBL | A0A162AX90 | 0.0 | A0A162AX90_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5942 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-21 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007980 |