PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007945
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 277aa    MW: 31369.3 Da    PI: 5.5617
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007945genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.72e-1521111186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +Wt++ + +L++a  ++  +l+rg+l++++W+ev++++     ++++  r+ +qCk++++ l+k+yk +k++  +    + s++ +fd+l+
  DCAR_007945  21 CWTEEATATLVDAWGRRYIDLNRGNLRQKDWQEVADAVnsrhgHSKKTLRTDVQCKNRIDTLKKKYKVEKARVVDSDGAAASNWMFFDKLD 111
                  8**************************************88888888889***********************999999999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2419112No hitNo description
Gene3DG3DSA:1.10.10.606.8E-42085IPR009057Homeodomain-like
PROSITE profilePS510298.64822118IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSELPESSPF PSKSPPFRED CWTEEATATL VDAWGRRYID LNRGNLRQKD WQEVADAVNS  60
RHGHSKKTLR TDVQCKNRID TLKKKYKVEK ARVVDSDGAA ASNWMFFDKL DFLIGPKMSE  120
TKSPPTAIPL PIRRGERIEP LAVALPQKRS AASVADDSYF RRNYSAVAAA AAAVDEDDDE  180
EQEQEVSEEI GGNGREQGLQ MLAKAIDRFA NMYERVERDK QLQVIEFEKQ RMQFVKDLEV  240
QRMQLLMDTQ VHLEKMKRAN RSGSGSDGEI SCVLNI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236898.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A166EXT40.0A0A166EXT4_DAUCS; Uncharacterized protein
STRINGVIT_10s0003g01300.t017e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-59sequence-specific DNA binding transcription factors