PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007932 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 256aa MW: 28824.7 Da PI: 4.6739 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.7 | 5.4e-17 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i+n+ r+ t+ kR++g++KK eEL +LC+++++ ii+s+ + DCAR_007932 10 FISNDATRKATYKKRKKGLMKKVEELTTLCGIDACAIIYSPYD 52 8***************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.512 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.30E-19 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 5.36E-23 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-17 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTRKKVKLAF ISNDATRKAT YKKRKKGLMK KVEELTTLCG IDACAIIYSP YDEQPEVWPD 60 VAGVERVVEK FKSMPETQQS RKMLNQESFT RQRIAKTNEQ LKKQLKENRE KEMTEVMSQC 120 LTGQLGLHNL MLPDLNDLGF LVDQKLQEIN KKMNEMALQE ATQQQQVVTP EEAPQEQQVV 180 PTTVSDNVGV LAGGVVEEQR LDAGGNTDVD AYGLVPQWFN NDAVVSDNVT ADYQDLGFMT 240 PFGDENNPVA WANFF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFISNDATRKATYKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233691.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-59 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A166EXI8 | 0.0 | A0A166EXI8_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0005s00420.1 | 1e-74 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-57 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007932 |
Publications ? help Back to Top | |||
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