PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007870
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 941aa    MW: 104678 Da    PI: 6.3833
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007870genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.5e-23127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  DCAR_007870 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIGRDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220
                  99*****************************85544444..89***********************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  DCAR_007870 221 LLLGIRRA 228
                  9****997 PP
2Auxin_resp119.33.1e-39253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaast+s F+++YnPr+s+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  DCAR_007870 253 AAHAASTNSRFTIFYNPRSSPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-45112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-41118242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-19126227No hitNo description
SMARTSM010196.6E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041127229IPR003340B3 DNA binding domain
PfamPF023626.4E-21127228IPR003340B3 DNA binding domain
PfamPF065072.9E-34253336IPR010525Auxin response factor
PfamPF023097.5E-8794893IPR033389AUX/IAA domain
SuperFamilySSF542771.24E-6803882No hitNo description
PROSITE profilePS5174524.182807891IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MRLSSVGFNQ QSPEGESRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDTHIPNYPS LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLNPQEQKEA FLPSDLGSAS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPVQELIGR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRASR PQAFMPSSVL  240
SSDSMHLGLL AAAAHAASTN SRFTIFYNPR SSPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFNGMKDD GLGMNYPLAW IRGDSGAQGF QSLNFQGIGV  420
SPWLHPRLDA SMLGTETADV YQAMAVAALQ DMRAVETSKQ TVPSLLQLQQ AQGGSSRSDS  480
LLSNEMMRQS LPQPQYLQNL GENLSVAQTQ SHLLQQQNSF INQLQQQQQQ DHQQQQHYRQ  540
QLQQQQQQQQ QQQQQHQQQQ QQQQQHQQQQ QKQEQQQQPH IRSQQQQFAD GRQVSGVVPL  600
LSQFTSHTQS PSFQTISSMQ QSFSDSSTNP VPNSVVSPLH SLLGSFPQDD TSQLISFPRS  660
SSLLTSSGWP PKRVAVDPIL SSGTRQGAMP PADHLAPLHS NITQCNVSLP PFPARDCSIE  720
QDGSNDPQSH LLFGVNIDST SLLQNGISSL REVGSDGDST TIPFASNYMT TAGTDYSLNT  780
MTPTNCIDES SFLQSPDDAG QANPSSRTFV KVYKSGSFGR SLDIAKFSSY NELRSELAHM  840
FGLEGQLEDP LRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPQ EVQQMGKQGI  900
ELLNSVPVQR LSSTSCDNYA SQQDSRTLNA GIASVGSLDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235181.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A162AX020.0A0A162AX02_DAUCS; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]