PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007844
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92802.9 Da    PI: 6.0282
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007844genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181573357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  DCAR_007844 15 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                 6789*****************************************************97 PP
2START1662.7e-521633692203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W ++++  ++l vi +g  g+++l++++
  DCAR_007844 163 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRTSWFRDCRCLDVLSVIPTGngGTIELIYMQ 259
                  68999*****************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   s  +vRa +lpSg+li+p+++g+s + +v+hvdl+ ++++++lr+l++s+++ 
  DCAR_007844 260 TYAPTTLASaRDFWTLRYTTTLEDGSLVICERSLNSSTGGPSgppSTCFVRADMLPSGYLIRPCDGGGSIINIVDHVDLNPWSVPEVLRPLYESSRIL 357
                  *************************************99999888999************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++k+++a l++ 
  DCAR_007844 358 AQKMTMASLRHI 369
                  *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611074IPR001356Homeobox domain
SMARTSM003897.1E-151278IPR001356Homeobox domain
PfamPF000465.6E-161573IPR001356Homeobox domain
SuperFamilySSF466893.17E-161577IPR009057Homeodomain-like
CDDcd000864.03E-161575No hitNo description
Gene3DG3DSA:1.10.10.601.7E-181773IPR009057Homeodomain-like
CDDcd146861.48E-567106No hitNo description
PROSITE profilePS5084825.412153381IPR002913START domain
CDDcd088752.52E-70157373No hitNo description
Gene3DG3DSA:3.30.530.204.6E-23161368IPR023393START-like domain
SMARTSM002343.4E-46162372IPR002913START domain
SuperFamilySSF559614.12E-38163374No hitNo description
PfamPF018527.3E-50163370IPR002913START domain
PfamPF086708.5E-50698842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALAMHRDQQ MDSSKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLGAM NKLLMEENDR LQKQVSHLVY ENGYMRTQLH  120
TVSTTTTDTS CESVVVSGQQ QQLNPNPPHP QRDANSPAGL LAIAEETLAE FLSKATGTAV  180
DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRT SWFRDCRCLD  240
VLSVIPTGNG GTIELIYMQT YAPTTLASAR DFWTLRYTTT LEDGSLVICE RSLNSSTGGP  300
SGPPSTCFVR ADMLPSGYLI RPCDGGGSII NIVDHVDLNP WSVPEVLRPL YESSRILAQK  360
MTMASLRHIR QIAQETSGEI QYIGGRQPAV LRTFSQRLCR GFNDAVNGFL DDGWSILDSD  420
GVEDVTIAIN SNPEKFIGSQ YNNSLSMLPT FGGVLCAKAS MLLQDVPPAL LVRFLREHRS  480
EWADYGIDAY SAASLKASPY AVPCARPGGF SGTQVILPLA HTVEHEEFLE VVRLEGHAFS  540
PEDMALSRDM YLLQLCSGLD ENAAGACAQL VFAPIDESCA DDAPLLPSGF RVIPLDPKSD  600
KPSANRTLDL ASTLEGGPGG ARPPGEADIN SYNLRSVLTI AFQFTFENHF RDNVAVMARQ  660
YVRSVVGSVQ RVAMAISPSR MNSHLGPKQL PGSPEALTLS RWICRSYRAH IGADLLQVDS  720
QADDAVLKQL WNHSDAILCC SVKTNISPVF TFANQAGLDM LETTLVALQD IMLDKVLDEA  780
GRKILLSEFS KIMQQGFAYL PAGICVSSMG RPISYEQAIA WKVLSDDNSS HCLAFMFVNW  840
SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236680.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A166EUU40.0A0A166EUU4_DAUCS; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]