PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 21918.2 Da PI: 4.9956 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 6e-16 | 28 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgr..WvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++k+ g+ Wv+eIr+p r r++lg+f +ae+Aa a++ a+++l+g DCAR_007742 28 PVYRGVRRRKS-GSgkWVSEIREP-----RspNRIWLGTFSSAEMAAVAYDVAALALKG 80 68****88884.5556*******9.....4489***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-9 | 28 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-31 | 29 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 29 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.484 | 29 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 29 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.62E-28 | 30 | 90 | No hit | No description |
PRINTS | PR00367 | 4.8E-9 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-9 | 70 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MERYSSSSFD ANNSSPPGSG SPSSGRHPVY RGVRRRKSGS GKWVSEIREP RSPNRIWLGT 60 FSSAEMAAVA YDVAALALKG KDAELNFPDS ASSLPVPASA SPRDIQAAAA IAASAAGAAV 120 DTFRGVDRTT NTRAMIADPN INTNNNVIAS RVDHDNNFVD EDMIFDMPNI LVNMAHGMLL 180 SPPRMNVEAD FDPDYAGDNL WNYP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 27 | 88 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233662.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 4e-55 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A166ES11 | 1e-144 | A0A166ES11_DAUCS; Uncharacterized protein | ||||
STRING | XP_009793202.1 | 1e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 8e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007742 |