PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007740
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GeBP
Protein Properties Length: 354aa    MW: 39215.6 Da    PI: 5.151
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007740genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.74.9e-3594184397
       DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  ++r+wse+Dei lLqG+i+fk+++g +p++d++af++fv++sis++vsk+q+v+Kir+LK K+  + ++     +++f k+hd+ +felsk iWg
  DCAR_007740  94 VNRVWSEQDEIGLLQGMIEFKSRKGEDPYSDMNAFHSFVQDSISVHVSKKQVVDKIRKLKYKYLANAER----GDVVFVKPHDETVFELSKVIWG 184
                  68*******************************************************************....899******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-3095184IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MARKRPSRPI DILAAAAAND QSRHPDNHAD RSGSGSESNK LSGSDPDSVV IPKPIEQNSP  60
NRKSSRKRSL PKHRLLDESE GSSKKARVGS IGSVNRVWSE QDEIGLLQGM IEFKSRKGED  120
PYSDMNAFHS FVQDSISVHV SKKQVVDKIR KLKYKYLANA ERGDVVFVKP HDETVFELSK  180
VIWGGDGSVR VTKDKEDGNV VENGMNENGV EVDDEEGGNV VENGVNEKFV VVENGIEVDG  240
EEGGNVVENV VNGKVDVVEN GVEVSDERED GGRDFKEVYP YLSIGWESDF TCSSLFKNYL  300
TGNMHSVGSG KLREMDKKWK NLYMEELKLY VKKLDLVKEH AQAVLDRLST SDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231596.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A162AWP90.0A0A162AWP9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-29DNA-binding storekeeper protein-related transcriptional regulator