PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007656
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 374aa    MW: 41149.5 Da    PI: 4.7951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007656genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19100149255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a++a +++++g
  DCAR_007656 100 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTYNTAEEAARAYDAEARRIRG 149
                  69*******.**********94....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.868100157IPR001471AP2/ERF domain
CDDcd000181.74E-31100158No hitNo description
Gene3DG3DSA:3.30.730.103.4E-32100158IPR001471AP2/ERF domain
SMARTSM003802.5E-35100163IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-22100158IPR016177DNA-binding domain
PRINTSPR003672.4E-11101112IPR001471AP2/ERF domain
PfamPF008473.6E-12101149IPR001471AP2/ERF domain
PRINTSPR003672.4E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MCGGAIISDF VPPSRTARRV NAADLLWNPR VKNDKTRSNY YSKPLITDLD EDFEADFQGF  60
KDDEILLKPL SFSTKGSDAI KSVETNEDAE GSSKRKRKNQ YRGIRQRPWG KWAAEIRDPQ  120
KGVRVWLGTY NTAEEAARAY DAEARRIRGN KAKVNFPDEG APAAMKRISK PKPQDVIRKE  180
SSNSHSAMYQ NSSLVNRPDG GYYSPLGFVE EKPMPKLNGF VDAYPITGTF GLNPVNSSDS  240
AAKLFSSDQG SNSFDYSDFG WGEHSSKTPE ITSVLSATLE GEEAQFLKDA KPAKKLKPNS  300
ADLVSGEEGT EKSQDFTSFE SEMKFFETPY MDGSSWDDSV DAFLGGGDAT QDGGASVNLW  360
AFDDLSCMLG EAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20100157260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20100157563ATERF1
3gcc_A3e-20100157563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236173.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2
RefseqXP_017236174.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2
TrEMBLA0A161XIA10.0A0A161XIA1_DAUCS; Uncharacterized protein
STRINGXP_009338318.11e-129(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.38e-65related to AP2 12