PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007645
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 327aa    MW: 38097.7 Da    PI: 9.3397
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007645genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC672.5e-2177117242
          WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                   epgrC+RtDGKkWRCsr++ + +k+CE+H+hrgr++srk+
  DCAR_007645  77 LEPGRCKRTDGKKWRCSRDAHRESKYCEKHMHRGRNNSRKP 117
                  69************************************996 PP
2QLQ46.79.8e-171144336
          QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 +Ta+Ql+++k+Q+l+y y+++++PvP +Ll+a++
  DCAR_007645 11 LTASQLEEFKHQALIYNYMVSGVPVPTDLLFALK 44
                 8******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-8945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.3421045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.6E-111143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166721.7576120IPR014977WRC domain
PfamPF088792.7E-1878117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMGSVQNRYF LTASQLEEFK HQALIYNYMV SGVPVPTDLL FALKRKLDFS STLCLHKESS  60
AARWEYYHKG LTRKEDLEPG RCKRTDGKKW RCSRDAHRES KYCEKHMHRG RNNSRKPEAI  120
TTNTTSPVMK IHLNSAHDQP AIQTSALIHP DSLYSQSSPM HQNSRTQQMF MESKSPYQTY  180
KDYRFMQGMR DDESAFFPGV SRTVRSQHES YTASEVASSD YFRAINDHGK IKEHRRQEED  240
RDSKKHCFIL GNDFKPARSI KVDRGEENQE GFHQFFSEWP LKGKAQWLNN EEKQSDHASL  300
SDIQISTSKP MSTLELFQPK PTVHWY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236830.10.0PREDICTED: growth-regulating factor 5-like
TrEMBLA0A166EPB10.0A0A166EPB1_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-39growth-regulating factor 5