PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007580
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 668aa    MW: 73261.2 Da    PI: 5.6642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007580genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.58.4e-171770352
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++++q+kvWFqNrR
  DCAR_007580 17 KYVRYTPEQVEALERVYHECPKPSSIRRQQLIRECpilsNIETKQIKVWFQNRR 70
                 5679*************************************************9 PP
2START100.13.9e-329321190205
                  EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
        START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                   +q   ++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ +     s++Rae lpSg+li+p+++g+s +++v+h++l+++ +++++r+l
  DCAR_007580  93 WVQMPGMKLYAPTTLAPaRDFWLLRYTTVMEDGSLVVCERSLSNTQNSSMppVLSFARAEILPSGYLIRPCDGGGSVIHIVDHMNLEAWNVPEVMRPL 190
                  5778889**************************************998777789******************************************** PP

                  HHHHHHHHHHHHHHHTXXXXX CS
        START 185 vksglaegaktwvatlqrqce 205
                  ++s+++ ++kt++a+l+++++
  DCAR_007580 191 YESSTVLAQKTTMAALRHLKQ 211
                  *****************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002343.2E-111212IPR002913START domain
PROSITE profilePS5007113.5241270IPR001356Homeobox domain
SMARTSM003895.5E-111480IPR001356Homeobox domain
SuperFamilySSF466892.99E-141770IPR009057Homeodomain-like
CDDcd000867.04E-151770No hitNo description
PfamPF000461.9E-141870IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-162070IPR009057Homeodomain-like
PROSITE profilePS5084818.82153221IPR002913START domain
PfamPF018525.8E-2994211IPR002913START domain
SuperFamilySSF559616.73E-19101211No hitNo description
Gene3DG3DSA:3.30.530.207.2E-13104208IPR023393START-like domain
PfamPF086706.5E-51524666IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MMAMSCKDGK GVMDNGKYVR YTPEQVEALE RVYHECPKPS SIRRQQLIRE CPILSNIETK  60
QIKVWFQNRR LLSIAEETLT EFLSKATGTA IEWVQMPGMK LYAPTTLAPA RDFWLLRYTT  120
VMEDGSLVVC ERSLSNTQNS SMPPVLSFAR AEILPSGYLI RPCDGGGSVI HIVDHMNLEA  180
WNVPEVMRPL YESSTVLAQK TTMAALRHLK QISLEVSQSS AANWGRQPAA LRALSQKLSR  240
GFNEAINGFA DEGWSLMGSD GMDDVTILVN SSPDKLLGLN MSFSNGLPSI GHVVLCAKAS  300
MLLQNVPPAI LVRFLREHRS EWADCNVDAY SAAAVKIGPC SFPGSRMGNT GSQLLEVVKL  360
EGMVPCPEDS IMPRDMFLLQ LCGGMDENAF GTCAELIFAP IDPSFADDAP LLPSGFRIIC  420
LDSKKESSSP NRTLDLASAL EVGSAVSKGF GEYNDGSGST RSVMTIAFEF ACESHMQDTV  480
ASMARQYVRS VISSVQRVAL ALSPSHLNVY GSLLPSLGTP EAQTLARWVC HSYRCYLGSE  540
LIKTAGEGSD SILKTLWHHP DAVLCCSIKA MPVFNFANQS GLDMLETTLV ALQDITLEKI  600
FDDNGRKSLS SQLPQIMQQG FACLQGGICL SSMSRPISYE RALAWKVLNE EENAHCICFM  660
FINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5347164e-38KF534716.1 Populus alba x Populus glandulosa HD-ZIPIII mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235966.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A162AWB00.0A0A162AWB0_DAUCS; Uncharacterized protein
STRINGVIT_09s0002g03740.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]