PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007570
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 766aa    MW: 84977.1 Da    PI: 6.6723
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007570genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.71.5e-21110165156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t++q++e+e+lF+++++p++++r+eL++klgL  rqVk+WFqNrR++ k
  DCAR_007570 110 RKKYHRHTADQIREMEALFKESPHPDEKQRQELSQKLGLHPRQVKFWFQNRRTQIK 165
                  7999************************************************9877 PP
2START209.11.7e-652825041206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  e+a++a++el  +a+ +ep+W +s     e++n+de++++f+ ++        +s+ea+r+sgvv+m++ +lv+ ++d++ qW+e ++    ka++++
  DCAR_007570 282 EIANKATEELTNMATRGEPLWIRSFetgrEILNYDEYMKEFSVENLtkrrakgSSVEASRDSGVVFMDPLTLVQCFMDVN-QWQELFPciisKAAIVD 378
                  57899*******************99***************887779*********************************.***************** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                  vi++g      ga+qlm+aelq+l+p+v+ R+++fvR+++ql+a++w+ivdvS+d  +++      +R+ ++pSg++i +ksnghskv+wveh+++++
  DCAR_007570 379 VIDNGegdsknGAIQLMFAELQMLTPVVAtREVYFVRHCKQLTADQWAIVDVSIDRVENNID----ARCSRRPSGCIINDKSNGHSKVIWVEHIECQK 472
                  ************************************************************97....******************************** PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                  +++h l++ +v+sg+a+ga++w++tlq qce+
  DCAR_007570 473 STVHTLYHTIVNSGVAFGASHWMKTLQLQCER 504
                  ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-2397161IPR009057Homeodomain-like
SuperFamilySSF466891.09E-2098168IPR009057Homeodomain-like
PROSITE profilePS5007117.993107167IPR001356Homeobox domain
SMARTSM003891.5E-19109171IPR001356Homeobox domain
PfamPF000467.6E-19110165IPR001356Homeobox domain
CDDcd000864.55E-17114165No hitNo description
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PROSITE profilePS5084840.335273507IPR002913START domain
SuperFamilySSF559615.63E-31275504No hitNo description
CDDcd088757.98E-105277503No hitNo description
PfamPF018521.8E-53282504IPR002913START domain
SMARTSM002341.3E-63282504IPR002913START domain
SuperFamilySSF559611.51E-11534746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MVVVDMRPDK PPSPPPNQIH KPSPTIKNLF PSPALSLSLA GIFRHGGGAA ANYMDVEEGD  60
EAAGGGRGSS SRREDPTDIS SENSVPVRSD DDYGDQEDDV DADKNQKKKR KKYHRHTADQ  120
IREMEALFKE SPHPDEKQRQ ELSQKLGLHP RQVKFWFQNR RTQIKAIQER HENSLLKTEM  180
DRLRDENKGL REIITKGACL SCGVPTSAKD AIISSEEQQL RIENARLKAE NEKLRAATGK  240
YAVESPPART TCSPGIDQVG SISCSLDSYS CTFGLEKSQI IEIANKATEE LTNMATRGEP  300
LWIRSFETGR EILNYDEYMK EFSVENLTKR RAKGSSVEAS RDSGVVFMDP LTLVQCFMDV  360
NQWQELFPCI ISKAAIVDVI DNGEGDSKNG AIQLMFAELQ MLTPVVATRE VYFVRHCKQL  420
TADQWAIVDV SIDRVENNID ARCSRRPSGC IINDKSNGHS KVIWVEHIEC QKSTVHTLYH  480
TIVNSGVAFG ASHWMKTLQL QCERLVFFMA TNIPTKDSSG ITTLAGRKSI LKLAQRMTRS  540
FYRALGASNY QSWNKATSKN GEDIRIASRK NFNDPGEPLG AVLCAILSVW LPVPHQSLFD  600
FLRDETRRNE WEIMANEGPV QNIASMAKGQ DRGNAVTIQA MKHKEKSMWI LQDSCTNAYE  660
STIVYAPVDI GSMQSAMTGC DSSNIAILPS GFSILPDGLE SRPLVISSRQ EDKSADGGSL  720
LTIAFQILTS NSPSEKLSME SIESVKTLVS GTLKNIKTAL QCESG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102109DKNQKKKR
2107111KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232370.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A162AW980.0A0A162AW98_DAUCS; Uncharacterized protein
STRINGXP_008228560.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]