PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007526 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28194.2 Da PI: 8.125 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.7 | 3.5e-14 | 9 | 55 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 e ks + +++ +R++ i KK EL +LC+++++ ++f+ +g++ ++ DCAR_007526 9 EQKSLKRTSYNNRKECIKKKTMELATLCGIDACTVMFGVDGEIESWP 55 7899****************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.405 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-13 | 7 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-10 | 9 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MESKKKDHEQ KSLKRTSYNN RKECIKKKTM ELATLCGIDA CTVMFGVDGE IESWPEDPKE 60 AKAIIKKFKD LTSNPHKRTT VKDESRRKVV DVPGGEVVSC QENSTEVKGS FENFSTKKVF 120 AEKAEIVGLG RMVGSLCSRP SLLTEYQECL KQVDDKLEAL LKRIEFLRTD QECGCMVNKQ 180 LDYSEMVNKQ LGYSEKKKRL YYPENSSPKR RKVSEEPVFL FDLNFPPPDQ LEASSLSSED 240 CSVLPNR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 211 | KKRLYYPENSSPKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017231061.1 | 0.0 | PREDICTED: uncharacterized protein LOC108205604 | ||||
TrEMBL | A0A161XI25 | 0.0 | A0A161XI25_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02235.1 | 4e-12 | AGAMOUS-like 51 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007526 |