PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 267aa MW: 30017.1 Da PI: 7.0251 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 1.9e-11 | 28 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 rWT+eE +l+ +a +++ ++ +W ++a++++ g+t ++k + DCAR_007393 28 RWTPEENKLFENALARYDKDtpdRWQKVAAMVP-GKTVADVKRQYK 72 9********************************.********9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-6 | 23 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.887 | 24 | 77 | IPR017884 | SANT domain |
SMART | SM00717 | 4.4E-12 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.16E-13 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-9 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 9.1E-10 | 28 | 73 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MRFGMEILSP FSYFPNSSWL LEESKSTRWT PEENKLFENA LARYDKDTPD RWQKVAAMVP 60 GKTVADVKRQ YKELEDDVSS IEAGLFPTPG YSQSPFTLEW GNSTNGFDGF KASFGGKRSC 120 GNRPSDQERK KGVPWTEEEH KQHSGGKDKR RASIHDITTV NLNENQTPSP DNKRISSMDQ 180 CNALSQHTNS SAMSRTPYQW NQSNNGAAAM AFSQTSGNMF MSPYGLNSHG IKVEDHNFQR 240 ANIHESYMGT QDMVFQMQSG LHNLHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-16 | 29 | 94 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017231639.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-100 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A166EH32 | 0.0 | A0A166EH32_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0009s04730.1 | 1e-114 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-64 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007393 |
Publications ? help Back to Top | |||
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